Priming in the Type I-F CRISPR-Cas system triggers strand-independent spacer acquisition,bi-directionally from the primed protospacer

Clustered regularly interspaced short palindromic repeats (CRISPR), in combination with CRISPR associated (cas) genes, constitute CRISPR-Cas bacterial adaptive immune systems. To generate immunity, these systems acquire short sequences of nucleic acids from foreign invaders and incorporate these into their CRISPR arrays as spacers. This adaptation process is the least characterized step in CRISPR-Cas immunity. Here, we used Pectobacterium atrosepticum to investigate adaptation in Type I-F CRISPR-Cas systems. Pre-existing spacers that matched plasmids stimulated hyperactive primed acquisition and resulted in the incorporation of up to nine new spacers across all three native CRISPR arrays. Endogenous expression of the cas genes was sufficient, yet required, for priming. The new spacers inhibited conjugation and transformation, and interference was enhanced with increasing numbers of new spacers. We analyzed ∼350 new spacers acquired in priming events and identified a 5′-protospacer-GG-3′ protospacer adjacent motif. In contrast to priming in Type I-E systems, new spacers matched either plasmid strand and a biased distribution, including clustering near the primed protospacer, suggested a bi-directional translocation model for the Cas1:Cas2–3 adaptation machinery. Taken together these results indicate priming adaptation occurs in different CRISPR-Cas systems, that it can be highly active in wild-type strains and that the underlying mechanisms vary.     

Lysine-derived cross-links in the egg shell membrane

Egg shell membrane protein contains significant quantities of the lysine-derived aldehyde, allysine, and its aldol condensation product. NaB³H₄ reduction followed by alkaline hydrolysis of purified protein revealed that there were six residues/1000 of both allysine and the reduced aldol while only traces of desmosine and isodesmosine were detected. The amino acid composition of the membrane protein did not resemble that of mammalian elastin.     

Free Edges in Epithelial Cell Sheets Stimulate Epidermal Growth Factor Receptor Signaling

The ability of epithelia to migrate and cover wounds is essential to maintaining their functions as physical barriers. Wounding induces many cues that may affect the transition to motility, including the immediate mechanical perturbation, release of material from broken cells, new interactions with adjacent extracellular matrix, and breakdown of physical separation of ligands from their receptors. Depending on the exact nature of wounds, some cues may be present only transiently or insignificantly. In many epithelia, activation of the epidermal growth factor receptor (EGFR) is a central event in induction of motility, and we find that its continuous activation is required for progression of healing of wounds in sheets of corneal epithelial cells. Here, we examine the hypothesis that edges, which are universally and continuously present in wounds, are a cue. Using a novel culture model we find that their presence is sufficient to cause activation of the EGFR and increased motility of cells in the absence of other cues. Edges that are bordered by agarose do not induce activation of the EGFR, indicating that activation is not due to loss of any specific type of cell–cell interaction but rather due to loss of physical constraints.     

Long-term effect of retrobulbar hematomas on the vision of cynomolgus monkeys.

Using the monkey model previously developed, we investigated the long-term effects of retrobulbar hematoma-induced retinal ischemia on functional vision and retinal histology. In this experimental model, ischemic periods of up to 120 minutes did not cause permanent visual deficits, as measured by flashed evoked visual potentials. Similarly, retinal histology showed no evidence of ischemic injury. From this we conclude that blindness after blepharoplasty is not due to retrobulbar hematomas alone and that additional predisposing factors are involved. The most likely additional factor is preexisting occult vascular ocular pathology.     

A histocytochemical study of the macrophages present in tissue responses to adult Onchocerca volvulus

Summary Immunocytochemical and histochemical properties of macrophages present in the subcutaneous chronic inflammatory responses surrounding adultOnchocerca volvulus (nodules) in human tissues were examined. Macrophages with strong non-specific esterase (NSE) and acid phosphatase (AcPase) activities but weak adenosine triphosphatase (ATPase) activity and HLA-DR expression (NSE⁺⁺⁺, AcPase⁺⁺⁺, ATPase^–/+, HLA-DR^–/+) were present in the centre of nodules. Many of the cells adhering to the surface of worms were NSE⁺⁺⁺, AcPase⁺⁺⁺, ATPase^–, HLA-DR⁺⁺⁺. The inner zone of the fibrous capsule of nodules contained macrophages with the profile NSE⁺⁺⁺, AcPase^–, ATPase^–/+, HLA-DR^–/+. A fourth type, NSE⁺⁺⁺, AcPase^–/+, ATPase^–/+, HLA-DR⁺⁺⁺, was located in the outer zone of the capsule, frequently within perivascular accumulations of macrophages, lymphocytes and plasma cells. Active fibroblasts were identified at the inner edge of the fibrous capsule by alkaline phosphatase staining. A feature of all nodules examined was the presence of lipid-filled macrophages, demonstrated by Oil Red O stain; these cells were usually situated in zones adjacent to the centre of nodules, and were of the NSE⁺⁺, AcPase⁺⁺, ATPase^–/+, HLA-DR^–/+ type. Lipid accumulation was not found to be related to the clinical status of the patients studied. The origin and functional significance of this lipid is unknown.     

The mechanism of low-frequency sound production in muscle.

Frog gastrocnemius muscles stimulated isometrically in a saline bath at 20 degrees C were found to produce a single ringing sound event beginning just before the tension record began to rise. The sound event was substantially over by the time the isometric tension began to fall. Results from studies correlating the spatial pattern of the sound, the amplitude and frequency of the sound as a function of the muscle length, and the response of both the passive and active muscle to a transverse pluck were found to be consistent with the conclusion that the sounds in these muscles are caused primarily by transverse resonant vibrations. As the muscle develops force, its lack of cylindrical symmetry gives rise to lateral motions, which are most likely the initiators of the bending vibrations detected as sound.     

Bot fly larvae (Cephenemyia spp., Oestridae) in mule deer (Odocoileus hemionus) from Utah

Ninety-nine mule deer (Odocoileus hemionus) from four Utah counties (Cache, Utah, Sanpete and Sevier) were examined for larvae of Cephenemyia spp. in 1985 and 1986. Numbers of first, second and third stage bot fly instars were related to age, sex, year and geographic location of the mule deer. Fawns and adult deer greater than or equal to 5.5 yr had a significantly (P less than or equal to 0.05) higher intensity (means = 37 and means = 68, respectively) of infection than the 1.5- and 2.5-yr-old age groups (means = 19 and means = 26, respectively). Infection by larvae was not significantly different between sexes. Infection was 100% in both years, but the mean intensity was significantly lower in 1986 (P less than 0.05). The decline may be related to differences in soil moisture between the 2 years. In 1985, 82% of the deer examined were infected with all three instars. Seventy-seven percent of all first instar larvae were observed in the trachea, usually in the fold immediately posterior to the epiglottis and corniculate cartilages. This new site of attachment for first instar larvae has not previously been recognized.     

Expression of the FGF-related proto-oncogene int-2 during gastrulation and neurulation in the mouse.

The proto-oncogene int-2 has been implicated in the formation of mouse mammary-tumour-virus-induced mammary tumours. Analysis of the predicted coding sequence indicates that int-2 is a member of the fibroblast growth factor family. Previous studies using Northern blot analysis suggested that normal expression of int-2 may be confined to extra-embryonic endoderm lineages of embryonic stages of mouse development. We have used in situ hybridization and Northern blot analysis to examine directly int-2 expression in embryo stem cells and in the developing embryo from early gastrulation to midsomite stages. Complex patterns of accumulation of int-2 RNA were observed in embryonic and extra-embryonic tissues. The data suggest multiple roles for int-2 in development which may include migration of early mesoderm cells and induction of the otocyst.